PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g033600.1
Common NameMTR_1g033600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 141aa    MW: 15730 Da    PI: 4.326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g033600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a   ++ +   +W++Ia  ++ g+t +++k ++ 
  Medtr1g033600.1 11 EWSWEQDKAFENALVTYPEDdsdRWEKIAVDVP-GKTMEEIKQHYE 55
                     7********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481458IPR017877Myb-like domain
SMARTSM007172.1E-9860IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-111064IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-41057IPR009057Homeodomain-like
CDDcd001673.30E-81158No hitNo description
PfamPF002491.2E-71155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTMDEVDNSS EWSWEQDKAF ENALVTYPED DSDRWEKIAV DVPGKTMEEI KQHYELLVDD  60
IGQIEAGCVP LPSYNSSSEG STSHASDEGV GGKKGGHNGH KNDESNHGTK GSRSDQERRK  120
GIAWTEEEHR QVYLLLICFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1912771176RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.260380.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466664.11e-101MYB family transcription factor
TrEMBLA0A072VRE41e-101A0A072VRE4_MEDTR; MYB family transcription factor
STRINGGLYMA20G01450.15e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1695658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-44MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]